####################################### 
By using this module, you agree to comply with the Rosetta license available at 
/n/app/rosetta/3.13/LICENSE.md or
https://harvardmed.atlassian.net/wiki/spaces/O2/pages/1995112452/Rosetta+License 
The Rosetta license states that: 
- the software can only be used for non-profit academic research. 
- you are not allowed to redistribute the software. 
- you should share your Rosetta results with other non-profit academic
researchers. 
- you must cite/acknowledge Rosetta and the Developers in your publications. 
- if you modify the software, Rosetta may make similar modifications, and you
won't sue them. 
####################################### 
core.init: Checking for fconfig files in pwd and ./rosetta/flags 
core.init: Rosetta version: rosetta.source.release-280 r280 2021.16+release.8ee4f02 8ee4f02ac5768a8a339ffada74cb0ff5f778b3e6 https://www.rosettacommons.org 2021-04-20T20:57:38.289184
core.init: command: relax.default.linuxgccrelease -scorefile relax.sc @flags -suffix 3
basic.random.init_random_generator: 'RNG device' seed mode, using '/dev/urandom', seed=-1044503424 seed_offset=0 real_seed=-1044503424
basic.random.init_random_generator: RandomGenerator:init: Normal mode, seed=-1044503424 RG_type=mt19937
core.init: Resolved executable path: /n/app/rosetta/3.13/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/relax.default.linuxgccrelease
core.init: Looking for database based on location of executable: /n/app/rosetta/3.13/database/
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: ref2015
core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBPoly1D.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBFadeIntervals.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBEval.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/DonStrength.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/AccStrength.csv
core.chemical.GlobalResidueTypeSet: Finished initializing fa_standard residue type set.  Created 986 residue types
core.chemical.GlobalResidueTypeSet: Total time to initialize 1.09 seconds.
basic.io.database: Database file opened: scoring/score_functions/rama/fd/all.ramaProb
basic.io.database: Database file opened: scoring/score_functions/rama/fd/prepro.ramaProb
basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.all.txt
basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.gly.txt
basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.pro.txt
basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.valile.txt
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n
core.scoring.P_AA: shapovalov_lib::shap_p_aa_pp_smooth_level of 1( aka low_smooth ) got activated.
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/a20.prop
protocols.relax.RelaxScriptManager: Reading relax scripts list from database.
protocols.relax.RelaxScriptManager: Looking for MonomerRelax2019.txt
protocols.relax.RelaxScriptManager: ================== Reading script file: /n/app/rosetta/3.13/database/sampling/relax_scripts/MonomerRelax2019.txt ==================
protocols.relax.RelaxScriptManager: repeat %%nrepeats%%
protocols.relax.RelaxScriptManager: coord_cst_weight 1.0
protocols.relax.RelaxScriptManager: scale:fa_rep 0.040
protocols.relax.RelaxScriptManager: repack
protocols.relax.RelaxScriptManager: scale:fa_rep 0.051
protocols.relax.RelaxScriptManager: min 0.01
protocols.relax.RelaxScriptManager: coord_cst_weight 0.5
protocols.relax.RelaxScriptManager: scale:fa_rep 0.265
protocols.relax.RelaxScriptManager: repack
protocols.relax.RelaxScriptManager: scale:fa_rep 0.280
protocols.relax.RelaxScriptManager: min 0.01
protocols.relax.RelaxScriptManager: coord_cst_weight 0.0
protocols.relax.RelaxScriptManager: scale:fa_rep 0.559
protocols.relax.RelaxScriptManager: repack
protocols.relax.RelaxScriptManager: scale:fa_rep 0.581
protocols.relax.RelaxScriptManager: min 0.01
protocols.relax.RelaxScriptManager: coord_cst_weight 0.0
protocols.relax.RelaxScriptManager: scale:fa_rep 1
protocols.relax.RelaxScriptManager: repack
protocols.relax.RelaxScriptManager: min 0.00001
protocols.relax.RelaxScriptManager: accept_to_best
protocols.relax.RelaxScriptManager: endrepeat
core.scoring.constraints.util: Constraint choice: thioether.cst
protocols.jd2.PDBJobInputter: Instantiate PDBJobInputter
protocols.jd2.PDBJobInputter: PDBJobInputter::fill_jobs
protocols.jd2.PDBJobInputter: pushed ubrsp5-wbp2_OXT.pdb nstruct index 1
protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... 
protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job
protocols.jd2.PDBJobInputter: filling pose from PDB ubrsp5-wbp2_OXT.pdb
core.import_pose.import_pose: File 'ubrsp5-wbp2_OXT.pdb' automatically determined to be of type PDB
core.io.pose_from_sfr.PoseFromSFRBuilder: Adding undetected upper terminus type to residue 630,  630 C
core.conformation.Residue: [ WARNING ] Residue::inter_residue_connection_partner: Invalid residue connection, returning BOGUS ID: this_rsd= CYX 395 connid= 3 partner_seqpos= 0
core.conformation.Residue: [ WARNING ] missing an atom: 395  V1  that depends on a nonexistent polymer connection! 
core.conformation.Residue: [ WARNING ]  --> generating it using idealized coordinates.
core.conformation.Conformation: [ WARNING ] Failed to find a residue connection for residue 395 with connection point 3
core.scoring.constraints.ConstraintsIO: read constraints from thioether.cst
core.scoring.constraints.ConstraintsIO: Read in 5 constraints
basic.io.database: Database file opened: scoring/score_functions/elec_cp_reps.dat
core.scoring.elec.util: Read 40 countpair representative atoms
core.pack.dunbrack.RotamerLibrary: shapovalov_lib_fixes_enable option is true.
core.pack.dunbrack.RotamerLibrary: shapovalov_lib::shap_dun10_smooth_level of 1( aka lowest_smooth ) got activated.
core.pack.dunbrack.RotamerLibrary: Binary rotamer library selected: /n/app/rosetta/3.13/database/rotamer/shapovalov/StpDwn_0-0-0/Dunbrack10.lib.bin
core.pack.dunbrack.RotamerLibrary: Using Dunbrack library binary file '/n/app/rosetta/3.13/database/rotamer/shapovalov/StpDwn_0-0-0/Dunbrack10.lib.bin'.
core.pack.dunbrack.RotamerLibrary: Dunbrack 2010 library took 0.2 seconds to load from binary
protocols.relax.FastRelax: CMD: repeat  540.636  0  0  0.55
protocols.relax.FastRelax: CMD: coord_cst_weight  540.636  0  0  0.55
protocols.relax.FastRelax: CMD: scale:fa_rep  167.215  0  0  0.022
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 17648 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -878.6  0  0  0.022
protocols.relax.FastRelax: CMD: scale:fa_rep  -845.529  0  0  0.02805
core.optimization.Minimizer: [ WARNING ] LBFGS MAX CYCLES 2000 EXCEEDED, BUT FUNC NOT CONVERGED!
protocols.relax.FastRelax: CMD: min  -2520.72  13.5989  13.5989  0.02805
protocols.relax.FastRelax: CMD: coord_cst_weight  -2520.72  13.5989  13.5989  0.02805
protocols.relax.FastRelax: CMD: scale:fa_rep  -1461.57  13.5989  13.5989  0.14575
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 15656 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1630.32  13.5989  13.5989  0.14575
protocols.relax.FastRelax: CMD: scale:fa_rep  -1569.71  13.5989  13.5989  0.154
protocols.relax.FastRelax: CMD: min  -2160.97  13.7869  13.7869  0.154
protocols.relax.FastRelax: CMD: coord_cst_weight  -2160.97  13.7869  13.7869  0.154
protocols.relax.FastRelax: CMD: scale:fa_rep  -1846.88  13.7869  13.7869  0.30745
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 14832 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1898.57  13.7869  13.7869  0.30745
protocols.relax.FastRelax: CMD: scale:fa_rep  -1876.07  13.7869  13.7869  0.31955
protocols.relax.FastRelax: CMD: min  -1994.05  14.1942  14.1942  0.31955
protocols.relax.FastRelax: CMD: coord_cst_weight  -1994.05  14.1942  14.1942  0.31955
protocols.relax.FastRelax: CMD: scale:fa_rep  -1762.89  14.1942  14.1942  0.55
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 14148 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1764.02  14.1942  14.1942  0.55
protocols.relax.FastRelax: CMD: min  -1818.5  14.2829  14.2829  0.55
protocols.relax.FastRelax: MRP: 0  -1818.5  -1818.5  14.2829  14.2829  
protocols.relax.FastRelax: CMD: accept_to_best  -1818.5  14.2829  14.2829  0.55
protocols.relax.FastRelax: CMD: endrepeat  -1818.5  14.2829  14.2829  0.55
protocols.relax.FastRelax: CMD: coord_cst_weight  -1818.5  14.2829  14.2829  0.55
protocols.relax.FastRelax: CMD: scale:fa_rep  -2171.42  14.2829  14.2829  0.022
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 17274 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -2207.16  14.2829  14.2829  0.022
protocols.relax.FastRelax: CMD: scale:fa_rep  -2199.04  14.2829  14.2829  0.02805
protocols.relax.FastRelax: CMD: min  -2657.6  14.7177  14.7177  0.02805
protocols.relax.FastRelax: CMD: coord_cst_weight  -2657.6  14.7177  14.7177  0.02805
protocols.relax.FastRelax: CMD: scale:fa_rep  -1664.44  14.7177  14.7177  0.14575
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 15748 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1712.97  14.7177  14.7177  0.14575
protocols.relax.FastRelax: CMD: scale:fa_rep  -1649.66  14.7177  14.7177  0.154
protocols.relax.FastRelax: CMD: min  -2236.73  14.5394  14.5394  0.154
protocols.relax.FastRelax: CMD: coord_cst_weight  -2236.73  14.5394  14.5394  0.154
protocols.relax.FastRelax: CMD: scale:fa_rep  -1954.55  14.5394  14.5394  0.30745
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 14908 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1955.37  14.5394  14.5394  0.30745
protocols.relax.FastRelax: CMD: scale:fa_rep  -1933.53  14.5394  14.5394  0.31955
protocols.relax.FastRelax: CMD: min  -2026.97  14.45  14.45  0.31955
protocols.relax.FastRelax: CMD: coord_cst_weight  -2026.97  14.45  14.45  0.31955
protocols.relax.FastRelax: CMD: scale:fa_rep  -1792.85  14.45  14.45  0.55
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 14018 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1793.52  14.45  14.45  0.55
protocols.relax.FastRelax: CMD: min  -1842.9  14.4409  14.4409  0.55
protocols.relax.FastRelax: MRP: 1  -1842.9  -1842.9  14.4409  14.4409  
protocols.relax.FastRelax: CMD: accept_to_best  -1842.9  14.4409  14.4409  0.55
protocols.relax.FastRelax: CMD: endrepeat  -1842.9  14.4409  14.4409  0.55
protocols.relax.FastRelax: CMD: coord_cst_weight  -1842.9  14.4409  14.4409  0.55
protocols.relax.FastRelax: CMD: scale:fa_rep  -2199.74  14.4409  14.4409  0.022
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 17118 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -2229.31  14.4409  14.4409  0.022
protocols.relax.FastRelax: CMD: scale:fa_rep  -2221.38  14.4409  14.4409  0.02805
protocols.relax.FastRelax: CMD: min  -2675.62  14.4224  14.4224  0.02805
protocols.relax.FastRelax: CMD: coord_cst_weight  -2675.62  14.4224  14.4224  0.02805
protocols.relax.FastRelax: CMD: scale:fa_rep  -1699.98  14.4224  14.4224  0.14575
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 15573 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1748.01  14.4224  14.4224  0.14575
protocols.relax.FastRelax: CMD: scale:fa_rep  -1686.34  14.4224  14.4224  0.154
protocols.relax.FastRelax: CMD: min  -2250.34  14.1455  14.1455  0.154
protocols.relax.FastRelax: CMD: coord_cst_weight  -2250.34  14.1455  14.1455  0.154
protocols.relax.FastRelax: CMD: scale:fa_rep  -1968.67  14.1455  14.1455  0.30745
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 14715 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1969.81  14.1455  14.1455  0.30745
protocols.relax.FastRelax: CMD: scale:fa_rep  -1947.85  14.1455  14.1455  0.31955
protocols.relax.FastRelax: CMD: min  -2036.3  14.0388  14.0388  0.31955
protocols.relax.FastRelax: CMD: coord_cst_weight  -2036.3  14.0388  14.0388  0.31955
protocols.relax.FastRelax: CMD: scale:fa_rep  -1800.71  14.0388  14.0388  0.55
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 13932 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1786.37  14.0388  14.0388  0.55
protocols.relax.FastRelax: CMD: min  -1847.65  13.9907  13.9907  0.55
protocols.relax.FastRelax: MRP: 2  -1847.65  -1847.65  13.9907  13.9907  
protocols.relax.FastRelax: CMD: accept_to_best  -1847.65  13.9907  13.9907  0.55
protocols.relax.FastRelax: CMD: endrepeat  -1847.65  13.9907  13.9907  0.55
protocols.relax.FastRelax: CMD: coord_cst_weight  -1847.65  13.9907  13.9907  0.55
protocols.relax.FastRelax: CMD: scale:fa_rep  -2205.4  13.9907  13.9907  0.022
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 17130 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -2238  13.9907  13.9907  0.022
protocols.relax.FastRelax: CMD: scale:fa_rep  -2229.43  13.9907  13.9907  0.02805
protocols.relax.FastRelax: CMD: min  -2686.46  14.0392  14.0392  0.02805
protocols.relax.FastRelax: CMD: coord_cst_weight  -2686.46  14.0392  14.0392  0.02805
protocols.relax.FastRelax: CMD: scale:fa_rep  -1690.45  14.0392  14.0392  0.14575
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 15677 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1744.98  14.0392  14.0392  0.14575
protocols.relax.FastRelax: CMD: scale:fa_rep  -1681.76  14.0392  14.0392  0.154
protocols.relax.FastRelax: CMD: min  -2259.08  13.8685  13.8685  0.154
protocols.relax.FastRelax: CMD: coord_cst_weight  -2259.08  13.8685  13.8685  0.154
protocols.relax.FastRelax: CMD: scale:fa_rep  -1979.66  13.8685  13.8685  0.30745
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 14720 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1975.36  13.8685  13.8685  0.30745
protocols.relax.FastRelax: CMD: scale:fa_rep  -1953.64  13.8685  13.8685  0.31955
protocols.relax.FastRelax: CMD: min  -2039.79  13.7323  13.7323  0.31955
protocols.relax.FastRelax: CMD: coord_cst_weight  -2039.79  13.7323  13.7323  0.31955
protocols.relax.FastRelax: CMD: scale:fa_rep  -1804.78  13.7323  13.7323  0.55
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 13950 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1803.27  13.7323  13.7323  0.55
protocols.relax.FastRelax: CMD: min  -1859.15  13.7705  13.7705  0.55
protocols.relax.FastRelax: MRP: 3  -1859.15  -1859.15  13.7705  13.7705  
protocols.relax.FastRelax: CMD: accept_to_best  -1859.15  13.7705  13.7705  0.55
protocols.relax.FastRelax: CMD: endrepeat  -1859.15  13.7705  13.7705  0.55
protocols.relax.FastRelax: CMD: coord_cst_weight  -1859.15  13.7705  13.7705  0.55
protocols.relax.FastRelax: CMD: scale:fa_rep  -2218.58  13.7705  13.7705  0.022
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 17097 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -2249.13  13.7705  13.7705  0.022
protocols.relax.FastRelax: CMD: scale:fa_rep  -2240.19  13.7705  13.7705  0.02805
protocols.relax.FastRelax: CMD: min  -2703.59  13.8374  13.8374  0.02805
protocols.relax.FastRelax: CMD: coord_cst_weight  -2703.59  13.8374  13.8374  0.02805
protocols.relax.FastRelax: CMD: scale:fa_rep  -1706.36  13.8374  13.8374  0.14575
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 16273 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1758.03  13.8374  13.8374  0.14575
protocols.relax.FastRelax: CMD: scale:fa_rep  -1695.29  13.8374  13.8374  0.154
protocols.relax.FastRelax: CMD: min  -2270.98  13.7678  13.7678  0.154
protocols.relax.FastRelax: CMD: coord_cst_weight  -2270.98  13.7678  13.7678  0.154
protocols.relax.FastRelax: CMD: scale:fa_rep  -1987.25  13.7678  13.7678  0.30745
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 14963 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1989.21  13.7678  13.7678  0.30745
protocols.relax.FastRelax: CMD: scale:fa_rep  -1967.14  13.7678  13.7678  0.31955
protocols.relax.FastRelax: CMD: min  -2051.41  13.7793  13.7793  0.31955
protocols.relax.FastRelax: CMD: coord_cst_weight  -2051.41  13.7793  13.7793  0.31955
protocols.relax.FastRelax: CMD: scale:fa_rep  -1811.94  13.7793  13.7793  0.55
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 14318 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1811.13  13.7793  13.7793  0.55
protocols.relax.FastRelax: CMD: min  -1864.52  13.8335  13.8335  0.55
protocols.relax.FastRelax: MRP: 4  -1864.52  -1864.52  13.8335  13.8335  
protocols.relax.FastRelax: CMD: accept_to_best  -1864.52  13.8335  13.8335  0.55
protocols.relax.FastRelax: CMD: endrepeat  -1864.52  13.8335  13.8335  0.55
protocols::checkpoint: Deleting checkpoints of FastRelax
protocols.jd2.JobDistributor: relax_ubrsp5-wbp2_OXT3_0001 reported success in 4560 seconds
protocols.jd2.JobDistributor: no more batches to process... 
protocols.jd2.JobDistributor: 1 jobs considered, 1 jobs attempted in 4561 seconds
basic.citation_manager.CitationManager: 
The following Rosetta modules were used during this run of Rosetta, and should be cited:

FastRelax Mover's citation(s):
Khatib F, Cooper S, Tyka MD, Xu K, Makedon I, Popovic Z, Baker D, and Players F.  (2011).  Algorithm discovery by protein folding game players.  Proc Natl Acad Sci USA 108(47):18949-53.  doi: 10.1073/pnas.1115898108.

Maguire JB, Haddox HK, Strickland D, Halabiya SF, Coventry B, Griffin JR, Pulavarti SVSRK, Cummins M, Thieker DF, Klavins E, Szyperski T, DiMaio F, Baker D, and Kuhlman B.  (2020).  Perturbing the energy landscape for improved packing during computational protein design..  Proteins "in press".  doi: 10.1002/prot.26030.


